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Quick Start
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Luna docker images are available to help you get started with Luna.
Before running these images, be sure to install `Docker `_ on your workspace.
Running Luna Pathology Tutorials on Docker
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We provide a docker image to help you get started with pathology analysis using Luna workflows.
This image includes:
- Luna pathology library
- Luna notebook tutorials with sample data
Along with web applications:
- JupyterLab for running notebooks
- Digital Slide Archive (girder and mongodb) for viewing the slides and annotations
These set of notebook tutorials walk you through analysis workflows.
A static version of the notebook :ref:`Tutorials` is also available on the documentation site for your reference.
1. Clone the git repository
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.. code-block::
git clone https://github.com/msk-mind/docker.git
2. Run the docker-compose
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- Build the docker image
.. code-block::
cd docker/luna_tutorial
make build
- Run the docker image
.. code-block::
make run
Copy paste the Jupyter URL printed in `luna_tutorial/vmount/logs/tutorial.log`,
and you will see a set of ipynb notebooks for exploring end-to-end Luna pathology analysis workflow.
To login to DSA, go to http://localhost:8080 and login with admin/password.
After login, you can navigate to the TCGA Collection, and explore images on HistomicsUI.
For details on using DSA, please refer to `DSA documentation `_