Index

A

add_contours_for_label() (in module luna.pathology.common.build_geojson)

apply_csv_filter() (in module luna.common.utils)

B

build_all_geojsons_from_default() (in module luna.pathology.common.build_geojson) build_default_geojson_from_annotation() (in module luna.pathology.common.build_geojson)

build_geojson_from_annotation() (in module luna.pathology.common.build_geojson) build_geojson_from_pointclick_json() (in module luna.pathology.common.build_geojson) build_labelset_specific_geojson() (in module luna.pathology.common.build_geojson)

C

clean_nested_colname() (in module luna.common.utils) clear() (luna.common.config.ConfigSet method) cli_runner() (in module luna.common.utils) close() (luna.common.Neo4jConnection.Neo4jConnection method) CodeTimer (class in luna.common.CodeTimer) commute_all_sink_id() (luna.common.Neo4jConnection.Neo4jConnection method) commute_cohort_id_to_spark() (luna.common.Neo4jConnection.Neo4jConnection method) commute_record_id_to_spark() (luna.common.Neo4jConnection.Neo4jConnection method)

commute_sink_id_to_spark() (luna.common.Neo4jConnection.Neo4jConnection method) commute_source_id_to_spark() (luna.common.Neo4jConnection.Neo4jConnection method) commute_source_id_to_spark_query() (luna.common.Neo4jConnection.Neo4jConnection method) concatenate_regional_geojsons() (in module luna.pathology.common.build_geojson) CONFIG_LOCATION() (in module luna.common.constants) ConfigSet (class in luna.common.config) create_id_lookup_table() (luna.common.Neo4jConnection.Neo4jConnection method) create_id_lookup_table_where() (luna.common.Neo4jConnection.Neo4jConnection method)

D

dask_job() (in module luna.common.dask) does_not_contain() (in module luna.common.utils)

download_sv_point_annotation() (in module luna.pathology.common.slideviewer_client) download_zip() (in module luna.pathology.common.slideviewer_client)

E

expand_inputs() (in module luna.common.utils)

F

fetch_slide_ids() (in module luna.pathology.common.slideviewer_client)

find_parents() (in module luna.pathology.common.build_geojson) format() (luna.common.custom_logger.MultilineFormatter method)

G

generate_k_function_statistics() (in module luna.pathology.spatial.transforms) generate_uuid() (in module luna.common.utils) generate_uuid_binary() (in module luna.common.utils) generate_uuid_dict() (in module luna.common.utils) get_absolute_path() (in module luna.common.utils) get_address() (luna.common.Node.Node method) get_all_props() (luna.common.Node.Node method) get_config_set() (luna.common.config.ConfigSet method) get_create_str() (luna.common.Node.Node method) get_dataset_url() (in module luna.common.utils)

get_keys() (luna.common.config.ConfigSet method) get_local_dask_directory() (in module luna.common.dask) get_map_str() (luna.common.Node.Node method) get_match_str() (luna.common.Node.Node method) get_method_data() (in module luna.common.utils) get_names() (luna.common.config.ConfigSet method) get_or_create_dask_client() (in module luna.common.dask) get_qualified_name() (luna.common.Node.Node static method) get_slide_id() (in module luna.pathology.common.slideviewer_client) get_value() (luna.common.config.ConfigSet method) grouper() (in module luna.common.utils)

H

handler() (in module luna.pathology.common.build_geojson)

has_value() (luna.common.config.ConfigSet method)

I

init_logger() (in module luna.common.custom_logger)

J

JobExecutionError

K

Kfunction() (in module luna.pathology.spatial.stats)

L

load() (in module luna.common.PipelineBuilder) load_func() (in module luna.common.utils) luna.common module luna.common.CodeTimer module luna.common.config module luna.common.constants module luna.common.custom_logger module luna.common.dask module luna.common.Neo4jConnection module luna.common.Node module luna.common.PipelineBuilder module

luna.common.sparksession module luna.common.utils module luna.pathology module luna.pathology.analysis module luna.pathology.cli module luna.pathology.common module luna.pathology.common.build_geojson module luna.pathology.common.slideviewer_client module luna.pathology.spatial.stats module luna.pathology.spatial.transforms module

M

match_concept_node() (luna.common.Neo4jConnection.Neo4jConnection method) module luna.common luna.common.CodeTimer luna.common.config luna.common.constants luna.common.custom_logger luna.common.dask luna.common.Neo4jConnection luna.common.Node luna.common.PipelineBuilder luna.common.sparksession luna.common.utils luna.pathology luna.pathology.analysis luna.pathology.cli luna.pathology.common luna.pathology.common.build_geojson luna.pathology.common.slideviewer_client luna.pathology.spatial.stats luna.pathology.spatial.transforms

MultilineFormatter (class in luna.common.custom_logger)

N

Neo4jConnection (class in luna.common.Neo4jConnection)

Node (class in luna.common.Node)

P

post_to_dataset() (in module luna.common.utils) pretty_path() (in module luna.common.Neo4jConnection) PROJECT_LOCATION() (in module luna.common.constants)

prop_str() (luna.common.Node.Node static method) prop_str_repr() (luna.common.Node.Node static method) prune_empty_delayed() (in module luna.common.dask)

Q

query() (luna.common.Neo4jConnection.Neo4jConnection method)

R

rebase_schema_numeric() (in module luna.common.utils)

replace_token() (in module luna.common.utils)

S

set_aux() (luna.common.Node.Node method) set_data() (luna.common.Node.Node method)

set_namespace() (luna.common.Node.Node method) spark_session() (luna.common.sparksession.SparkConfig method) SparkConfig (class in luna.common.sparksession)

T

TABLE_LOCATION() (in module luna.common.constants) TABLE_NAME() (in module luna.common.constants) test_connection() (luna.common.Neo4jConnection.Neo4jConnection method)

test_count() (luna.common.Neo4jConnection.Neo4jConnection method) to_sql_field() (in module luna.common.utils) to_sql_value() (in module luna.common.utils)

U

unzip() (in module luna.pathology.common.slideviewer_client)

V

validate_params() (in module luna.common.utils)

W

with_event_loop() (in module luna.common.dask)