Installation
Contents
Installation¶
See below for installation instructions
1. Pre-requisites¶
On Ubuntu, you could install the pre-reqs with:
apt-get install -y openslide-tools python-openslide default-jre
2. Install with Pip¶
First, update your pip and install numpy (pyradiomics installation fails if numpy is not installed):
pip install --upgrade pip
pip install numpy
To install luna and its basic functionality, run this command in your terminal:
pip install pyluna
To install luna subpackages, with more features specify a subpackage {common, radiology, pathology} or install all with pyluna[all].
For example, to install luna pathology, run this command:
pip install pyluna[pathology]
This is the preferred method to install luna, as it will always install the most recent stable release.
If you don’t have pip installed, this Python installation guide can guide you through the process.
3. Setup LUNA_HOME and Configurations¶
LUNA_HOME is an environment variable that points to a location where luna configs will be stored.
Set
$LUNA_HOMEas the current directory:export LUNA_HOME=<path/to/your/workspace>
2. Prepare configuration files and place them at ``$LUNA_HOME/conf` Example configurations files are at Luna repo
Currently, we have two configuration files.
datastore.cfg: configuration for the backend store of your data. POSIX and Minio backends are supported.
logging.cfg: configuration for logging level and optional central logging in MongoDB.