pyluna-pathology.luna.pathology.cli package
Contents
pyluna-pathology.luna.pathology.cli package¶
Subpackages¶
- pyluna-pathology.luna.pathology.cli.dsa package
- Submodules
- pyluna-pathology.luna.pathology.cli.dsa.dsa_api_handler module
- pyluna-pathology.luna.pathology.cli.dsa.dsa_upload module
- pyluna-pathology.luna.pathology.cli.dsa.dsa_viz module
- pyluna-pathology.luna.pathology.cli.dsa.utils module
- pyluna-pathology.luna.pathology.cli.dsa.dsa_regional_annotations module
- Module contents
Submodules¶
pyluna-pathology.luna.pathology.cli.collect_tile_segment module¶
- luna.pathology.cli.collect_tile_segment.collect_tile_with_datastore(app_config: str, datastore_id: str, method_data: dict)[source]¶
Save tiles as a parquet file.
Save tiles as a parquet file, indexed by slide id, address, and optionally patient_id.
- Parameters
app_config (string) – path to application configuration file.
datastore_id (string) – datastore name. usually a slide id.
method_data (dict) – method parameters including input, output details.
- Returns
None
pyluna-pathology.luna.pathology.cli.extract_slide_texture_features module¶
pyluna-pathology.luna.pathology.cli.generate_tile_labels module¶
pyluna-pathology.luna.pathology.cli.infer_tile_labels module¶
pyluna-pathology.luna.pathology.cli.load_slide module¶
- luna.pathology.cli.load_slide.load_slide_with_datastore(app_config, datastore_id, method_data)[source]¶
Load a slide to the datastore from the whole slide image table.
- Parameters
app_config (string) – path to application configuration file.
datastore_id (string) – datastore name. usually a slide id.
method_data (dict) – method parameters including input, output details.
- Returns
None