Data Engineering CLIs

Luna Pathology offers data ingestion and data processing CLIs.

The data ingestion CLIs organize your pathology images and annotations with appropriate metadata. The data processing CLIs convert the pathology annotations into various formats compatible with other open-source tools like Qupath.

Note that the data ingestion CLIs rely on APIs that retrieve annotations from internal data sources.

Whole Slide Image (WSI) CLI

This module captures the metadata of your slides in a table.

Annotation CLIs

This module downloads point-click nuclear annotations and regional annotations, then converts them to geojson format.